handouts

Last updated: 09/11/07 10:03 AM Corrections		Biology C2005 and F2401: Intro Bio HANDOUTS Lec.: 1 . 2 . 3 . 4 . 5 . 6 . 7 . 8 . 9 . 10 . 11 .12 . 13 . 14 . 15 . 16 . 17 . 18 . 19 . 20 . 21 . 22 . 23 Extra copies of handouts not on Web are in boxes outside 744 Mudd. Many Mowsh Handouts are not on the web.
Lec. 1	1-1	Exponential growth
	1-2	Functional groups
	1-3	Flow of glucose through metabolic pathways
Lec. 2	2-1	Linkages in polymers
	2-2	Polarity I
	2-3	Polarity II
	2-4	Important polymers summary
	2-5	Minimal medium for E. coli; Bond strengths; Macromolecules
	2-6	Carbohydrates
	2-7	Glucose ring formation
	2-8	Glucose chair views
	2-9	Disaccharides in chair form
	2-10	Lipids
Lec. 3	3-1	Amino acids and peptides
	3-2	Amino acids (all 20)
	3-3	Polypeptides
	3-4	Paper chromatography
Lec. 4	4-1	Protein structure: 4 levels
	4-2	Protein structure: domains, space-filling and ribbon models.
	4-3	Protein separation methods
Lec. 5	5-1	Derivation of the Michaelis-Menten equation
	5-2a	Enzyme kinetics equations
	5-2b	Michaelis-Menten graph
	5-2c	Competitive inhibition graph
	5-2d	Non-competitive inhibition graph
	5-3a	Allopurinol--A competitive inhibitor example
	5-3b	Competitive inhibition Scheme
	5-3c	Non-competitive inhibition scheme
	5-4	Enzyme inhibition summary
Lec. 6		No handouts
Lec. 7	7-1a	Regeneration of ATP
	7-1b	Regeneration of NAD
	7-2	Glycolytic pathway
	7-3	First 5 steps of glycolysis
	7-4a	Oxidation of glyceraldehyde-3-phosphate (rxn.#6)
	7-4b	Energy levels in glycolysis
	7-4c	NAD
Lec. 8	8-1	Krebs (Citric Acid) Cycle
	8-2	Electron transport: energy levels
	8-3	Electron transport
	8-4	Mitochondria and the electron transport chain in the membrane
	8-5	ATP synthetase
	8-6	Outline of energy metabolism
Lec. 9	9-1	Fatty acid catabolism and anabolism
	9-2	Transamination and deamination of amino acids
	9-2	You are what you eat
	9-3	Serine biosynthesis
	9-3	Triglyceride biosynthesis
	9-4	Polysaccharide biosynthesis (hyaluronic acid)
	9-5	Metabolic map
Lec. 10	10-1	Parts of Nucleotides
	10-2	Shorthand
	10-3	Base Pairing, etc.
	10-4	Bases and Tautomers
Lec. 11	11-1	DNA Replication -- Meselson Stahl Experiment -- not on web
	11-2	DNA Replication -- Energy Considerations = not on web
	11-3	DNA Replication -- Events at Replication Fork
Lec. 12	12-A	PCR (older version is on web -- newer one in boxes)
	12-B	Comparison of DNA & RNA synthesis -- not on web
	12-C	NYTimes articles on uses of PCR (Times articles are not on web
Lec. 13	13-A	Genetic Code Table and Ribosome Structure; not on web
	13-B	Protein Synthesis
		NYTimes article on RNA interference
Lec. 14	14-A	Induction vs Repression & Feedback Inhibition -- not on Web
	14-B	Operons
		NYTimes articles on forensics, regulation by small RNA
Lec. 15	15-B	Comparison of Recombination and Complementation; plasmid vs fragment
	15-A	Viral Replication
Lec. 16	16 of '04	Not on web. Includes 4 restriction enzymes (see below), fig. 18-26 of Becker, and some sample RFLP's..
	The following handouts (16-1 to 16-8) are from previous years; most are from Dr. C. You may find them useful.
	16-1	Restriction Enzyme Action
	16-2	Northern blot
	16-3	Four Restriction Enzymes (same as on Dr. M's handout 16) Cloning in a Plasmid Plasmids as seen by electron microscopy (not on Web)
	16-4	Map of a popular commercial plasmid vector, pUC19 (not on Web)
	16-5	Genomic Library Construction
	16-6	Cloning a DNA Fragment from a Library
	16-7	DNA Restriction Fragment Analysis
	16-8	A Restriction Map
Lec. 17	17A 17B	Making a Library (none of handouts from 17 are on web; pick them up in boxes) Blots & Cloning 2 articles from Times.
lLec. 18	18A & B	Introns & Splicing; RNA processing (not on web)
Lec. 19	19A	Mitosis and Meiosis
	19B	Meiotic Chromosome Cycle, Karyotypes & Squashes
	19C	Super Cycle (top) & Non-Disjunction (bottom)
Lec. 20	20A	Monohybrid Crosses
	20B	Dominance
Lec. 21	21A	Dihybrid Crosses and Independent Assortment
	21B	Crossing Over/Linkage and Independent Assortment Diagrams
Lec. 22	22A	Measuring RF with Diploids
Lec. 23		No handouts
Lec. 24		No handouts
	Reminder!!	Handouts not on web are in boxes on 7th Floor Mudd outside 744.