C2006/F2402 '09 -- Outline For Lecture #6
(c) 2009Dr. Deborah Mowshowitz , Columbia University, New York, NY. Last update 02/05/2009 07:30 PM
Handouts: 6B. RME 6A: Protein Transport & Structure of Capillaries & Transcytosis (Not on web. Click here for a diagram of a capillary, and here for a diagram of transcytosis. For an electron micrograph of a capillary, click here.
I. Putting all the Methods of Transport of Small Molecules Together or What Good is All This?
A. How glucose gets from lumen of intestine → muscle and adipose cells. An example of how the various types of transport are used. (Handout 5A) Steps in the process:
1. How glucose exits lumen. Glucose crosses apical surface of epithelial cells primarily by Na+/Glucose co-transport. (2o act. transport)
2. Role of Na+/K+ pump. Pump in basolateral (BL) surface keeps Na+ in cell low, so Na+ gradient favors entry of Na+. (1o act. transport)
3. How glucose exits epithelial cells. Glucose (except that used for metabolism of epithelial cell) exits BL surface of cell (and enters interstitial fluid) by facilitated diffusion = carrier mediated transport. (Interst. fluid = fluid in between body cells.)
4. How glucose enters and leaves capillaries -- by simple diffusion through spaces between the cells. Note: this is NOT by diffusion across a membrane. For structure of capillaries, see handout 6A. Pictures are provided on handout since function is hard to understand without the anatomy. Shows how endothelial cells surround capillary lumen, forming pores between cells. Pores allow diffusion (of glucose and other small molecules) in and out of capillary. Proteins are too big to fit through pores.
5. How glucose enters body cells -- by facilitated diffusion (= carrier mediated transport). Carrier is only "mobilized" that is, inserted into membrane (by fusion of vesicles as explained previously) in some cell types (adipose & muscle) in presence of insulin. Carrier is permanently in cell membrane in other cell types (brain, liver). See below on GLUT transporters.
6. Role of glucose phosphorylation. Conversion of G → G-6-phosphate traps G inside cells.
For additional examples of the uses of the various types of transport processes, see Becker fig. 8-1 & 8-2. For pictures of steps 1-3, see http://www.biology.arizona.edu/cell_bio/problem_sets/membranes/graphics/cotransport_sys.gif or
Note both of these come from classes with extensive on line notes. The biochem course includes several animations of transport proteins.
B. How Glucose Reaches Body Cells -- Another look at handout 5-A. The steps in the process are described above in the order in which they occur. Here is a summary with the focus on the various types of transport involved.
1. Role of Active transport -- Needed to get glucose from lumen to inside of epithelial cell.
a. Primary active transport -- Na+/K+ pump keeps intracellular [Na+] low.
b. Secondary active transport -- Glucose enters epithelial cells by Na+/Glucose co-transport
2. Role of Passive Transport & Phosphorylation (of glucose)
a. Passive Transport -- Used to move glucose the rest of the way -- out of epithelial cells, in & out of capillaries, and into body cells.
b. Phosphorylation of glucose -- Used in the body cells to keep the free glucose level at the "end of the road" low, and ensure that the glucose gradient is "downhill" from epithelial cells to capillaries to body cells.
3. Role of Diffusion: Glucose and other small molecules (but not macromolecules) diffuse in and out of capillaries through the liquid filled spaces between the cells, not by diffusing across the cell membrane. Note that proteins are too big to enter or leave capillaries this way.
4. Role of GLUT transporters (another protein/gene family)
a. GLUT proteins are responsible for passive transport of glucose. All passive glucose transport across membranes (that is carrier mediated) depends on a family of proteins called GLUT 1, GLUT 2, etc. (GLUT = Glucose transporters)
b. Different family members (genes and proteins) are expressed in different cell types. GLUT 1 protein is found in plasma membrane of RBC & most other cells, GLUT 2 protein on BL surface of intestinal epithelial cells, GLUT 4 protein in muscle and adipose tissue, etc. (Note all genes for all proteins are present in all these cell types -- DNA is the same!)
c. All the genes and corresponding proteins are similar, but have significant structural and functional differences. This is another example of a gene/protein family. All the proteins have a similar overall structure -- 12 transmembrane segments, COOH and amino ends on intracellular side of membrane, etc. For a picture click here; For a diagram and table click here.
d. Position & Action of GLUT 4 is insulin dependent. GLUT 4 is the only insulin dependent member of the family. Insulin triggers insertion of GLUT 4 protein into the plasma membrane, by triggering vesicle fusion, as explained above. All the other proteins are located constitutively in their respective membranes.
e. Direction of transport. Note that one member of this family (GLUT 2) is responsible for ferrying glucose OUT of epithelial cells; different members are responsible for helping glucose ENTER most other cells. All family members bind glucose on one side of the membrane, change conformation and release glucose on the other side of the membrane. Which way the glucose goes (in or out) depends on the relative concentrations of glucose on the two sides of the respective membrane, not on which GLUT protein is used. (See problem 2-12 C.)
f. SGLT proteins are responsible for active transport of glucose. (SGLT = Sodium -glucose transporters). SGLT proteins make up a different protein family. The members of this family are responsible for active transport of glucose across membranes. (See problem 2R-2.)
Try problem 2-9 &
II. Ways that Big Molecules Enter Cells -- Types of Endocytosis. In all cases net effect is that cell membrane folds in and pinches off, forming a vesicle in the cytoplasm that contains material from the outside.
A. Pinocytosis = bulk phase endocytosis; no receptor. Cells take in random samples of surrounding fluid containing a random selection of extracellular substances.
B. Phagocytosis -- in specialized cells only -- extensions of cells (pseudopods) reach out and engulf solids. See Becker fig. 12-14. Vesicle that is formed is called a phagocytic vesicle (or vacuole) or phagosome.C. RME = receptor mediated endocytosis. Cells take in specific substances from surrounding fluid using a receptor. See Becker fig. 12-15 (diagram) & 12-16 (micrograph). Different cell types have different combinations of receptors.
III. RME -- Receptor Mediated Endocytosis
A. General and/or important Features.
1. Receptors -- Need specific receptor for each substance (or class of closely related substances) to be transported.
2. Concentrates substances transported -- moves them up their gradient.
3. Requires energy -- multiple stages in process use ATP or GTP. Energy must be required because substances move against their gradients. Energy is required to form the vesicles and to process and/or transport the vesicles inside the cell.
4. Role of clathrin -- A peripheral membrane protein is needed to deform membrane and allow vesicles to form -- provides a coat. (See Becker figs. 12-15 to 2-18 and/or Sadava fig. 5.17 (5.16.) Other proteins are required as well, but will not be discussed.
a. Clathrin is coat protein for vesicles forming from plasma membrane and trans-Golgi*.
b. Budding of other membranes involve different "coat" proteins. Best known are COPI & COPII which are involved in ER-Golgi transport. (See Becker for details if interested. Types of coats are summarized in table 12-2.)
*Note on terminology: Trans side of Golgi = "far end" = side away from nucleus and ER = last part that proteins travel through as they are processed in Golgi. Also called "TGN" for "trans Golgi Network." See Sadava fig. 4.11 (4.12) or Becker fig. 12-8 for labeled pictures. More details on structure and function of Golgi next time.
5. It's a cycle -- Exocytosis balances endocytosis so cell surface area stays the same. See Sadava fig. 5.16 (5.15) or Becker fig. 12-15. For LDL receptor, it takes about 10-20 minutes for one "round trip."
6. Topology -- material can enter and/or exit cell without being in contact with cytoplasm. Material can remain inside a vesicle or outside cell at all times.
7. Possible fates of endocytosed material -- Where does vesicle go? Where do receptor &/or ligand end up?
a. Degradation -- vesicle fuses with lysosomes and contents are degraded.
b. Return to surface -- material recycles -- vesicle fuses with plasma membrane.
c. Sorting -- not everything in the vesicle may go to the same place. Vesicle may fuse with endosome (sorting vesicle), and different parts of the endocytosed material may be directed to different destinations. (More details on a-c below.)
d. Transcytosis -- vesicle crosses cell and fuses with opposite cell surface. For examples see handout 6A or diagram of transcytosis (shows how antibodies enter lumen)
(1). Requires Receptor: Transcytosis requires a receptor for each substance transported. Receptor is not shown on 6A but is clearly shown on diagram of transcytosis
(2). Transcytosis = endocytosis + exocytosis = 2 steps
(a). Material binds to receptor and is endocytosed on one surface of the cell.
(b). Vesicle moves across cell and material is exocytosed on a different surface.
(3). Function. Can be used to move proteins, across a cell, in either direction. See examples above or RP3.
B. Stages of Cycle (Numbers match steps on handout 6B.) Click here for animation.
(1). Receptors bind material(ligand) to be internalized
(2). Receptors are in (or migrate to) coated pits = clathrin-coated parts of membrane
(3). Membrane starts to invaginate to form coated vesicle. A single vesicle can contain more than one type of receptor plus ligand.
(4). Coated vesicle forms(pinching off of vesicle is an energy requiring step)
(5). Uncoating occurs relatively quickly(uncoating requires energy)
(6). Vesicle is acidified to become endosome (or fuses with pre-existing endosome), and sorting of receptor(s) and ligand(s) begins.
- A single endosome may contain many different receptors and ligands, and different ones are sorted differently. (Some examples are given in detail below.)
- The uncoated, acidified vesicle can be called an endosome, early endosome, or a sorting vesicle.
- Acidification requires energy to run proton pump -- to move H+ into vesicle at expense of ATP. Pump is in membrane of vesicle.
Note: Details of sorting and recycling -- the remaining steps -- vary with material endocytosed. More details below for individual cases.
(7). Endosome splits. The substance we are following, and/or its receptor, can end up in either half.
In example shown on handout, one half gets the receptor and one half gets the ligand, as is the case for LDL. Other examples will be discussed in class and are outlined in detail below.
Note: endosome may not simply split in one step; process of sorting may be gradual. Pieces of different composition may gradually bud off as internal composition of remainder changes.
(8). What Happens to the Different Parts of the Endosome?
8A. Fate of vesicle with materials to be recycled (receptors and/or carriers) -- this vesicle fuses with plasma membrane in step 9. (In case of LDL, this vesicle would contain the receptor for LDL.)
8B. Fate of vesicle with material that remains inside the cell -- Vesicle delivers contents to appropriate cell compartment. (For LDL, vesicle delivers LDL to lysosomes, so material is degraded.)
(9). Exocytosis occurs-- returns receptors and/or other components to the plasma membrane or outside of cell.
Try Problem 2-6.
C. Some Specific Examples1. LDL (Low density lipoprotein) -- receptor recycled, but ligand (including protein part) degraded. See Becker, Box 12B or text of Sadava Ch. 50.4 (p.979 7th ed). Many of LDL details may have been included in general case, but are summarized below. Click here for a picture of LDL.
a. What is LDL? A particle containing cholesterol esters + some other lipids + a protein (carrier). Particle contains esterified cholesterol covered by monolayer of amphipathic lipid (phospholipid plus some unesterified cholesterol) + one molecule of carrier protein.
2. EGF (Epidermal Growth Factor) -- all the protein involved (ligand + receptor) is degraded
b. Why LDL?
(1) Why a monolayer on outside? Solubility. Cholesterol is insoluble in blood. (Too hydrophobic.) Need a way to ferry cholesterol through blood and into cell -- Cholesterol transport requires formation of particle with hydrophilic surface
(2) Why a carrier protein ? For binding to cell surface receptor (LDL receptor). A protein needed as ligand to bind to receptor.
(3) Summary of Roles of Parts of LDL:
(1). Carrier Protein = Ligand = what actually binds LDL receptor = protein part of LDL .
(2). Cholesterol -- What cell actually needs is the cholesterol part (for building its membranes &/or hormone synthesis).
c. Receptor, but not carrier, is recycled. Note: there are 2 separate proteins here that are easily confused
(1) Receptor protein on the cell surface = LDL receptor = binds LDL and allows uptake of cholesterol
(2) Carrier protein = ligand for LDL receptor = part of LDL and helps carry cholesterol through the blood.
d. Receptor and carrier are separated inside sorting vesicles/endosomes. All of LDL goes with carrier protein.
e. Need lysosomes to degrade carrier and release cholesterol (cholesterol esters in LDL must be split for cholesterol to be used).
(1). How LDL reaches lysosomes: vesicles/endosomes holding substrate fuse with pre-existing lysosomes, or vesicles with substrate fuse with vesicles from Golgi carrying newly made hydrolases to form new lysosomes. (More details on how hydrolases pass through the Golgi and are targeted to lysosomes to be discussed later.)
(2) Current terminology: relationship of early endosomes, late endosomes & lysosomes. Note: Most of this is FYI. In this course, the term "endosomes" will be used for both early and late endosomes.
(a). Early endosome = sorting vesicle. Term is used differently by different authors. Can be "early" on pathway into cell (by endocytosis) and/or "early" on pathway from Golgi to lysosomes. Therefore, early endosomes can mean any of the following:
(i) Uncoated & acidified vesicles from invagination of plasma membrane carrying newly endocytosed material,
(ii). Vesicles coming from Golgi carrying newly made hydrolases (more on this later).
(iii) Vesicles formed by fusion of (i) + (ii).
(b). Late endosome = vesicle containing hydrolytic enzymes (not yet activated) plus potential substrate. More acidic than early endosome. Material not destined for lysosomes has been jettisoned.
(c). Lysosomes = vesicle containing active hydrolytic enzymes and substrate. More acidic than late endosome. Formed by maturation of late endosome and/or fusion with pre-existing lysosome.
(3). Older terminology found in some texts (FYI only):
(a). Primary lysosome = vesicle with enzymes only.
(b). Secondary lysosome = enzymes + substrate = result of fusion of primary lyso. + another vesicle containing substrate.
f. Function of LDL uptake -- to supply a nutrient (cholesterol).
a. No carrier required; EGF (a protein -- unlike cholesterol, or Fe, see below) binds to receptor; EGF = signaling molecule = ligand for cell surface receptor & substance that will be transported into the cell.
b. Function of uptake -- to regulate signaling -- turn off signal and down regulate receptors (reduce # of cell surface receptors).
c. Receptor not recycled -- Ligand (signal molecule) and receptor degraded together.
d. Need lysosomes (to degrade both receptor and ligand).
3. Fe/Transferrin -- none of the protein involved is degraded -- all recycled
a. What is transferrin? Fe needs carrier protein (like cholesterol does) for transport and binding to receptor; carrier (= ligand for cell receptor) is called transferrin.
b. Both carrier & receptor are recycled.
c. No lysosomes needed -- iron is transported out of endosome (using transporter protein or channel in membrane); no protein is degraded.
d. Carrier and receptor separate outside cell after recycled
(1). Fe/transferrin binds to receptor at neutral pH and enters cell by RME.
(2). Inside cell, Fe transported out of vesicle into cytoplasm, leaving apo-transferrin stuck to receptor ("apo" means without ligand or cofactor).
(3). Apo-transferrin (= transferrin without Fe) sticks to receptor at low pH (in endosome) but separates at neutral pH (outside cell). This is contrary to usual behavior -- Most ligands stick to receptors at neutral pH but separate at low pH found in endosome.
(4). Note that apo-transferrin and Fe/transferrin have different affinities for the receptor at neutral pH. Under these conditions (neutral pH), Fe/transferrin binds to the receptor, and apo-transferrin separates from the receptor.
e. Function of uptake -- to supply a nutrient (Fe).
D. For Reference: Compare & Contrast for the examples described above for transport of X
|What's carried in (what is X)?||Fe||Cholesterol||Growth Factor|
|Function of X||Metabolism (Fe is cofactor for many proteins)||Metabolism (cholesterol is a component of cell membranes; used for hormone synthesis)||Signal|
|Ligand (What binds receptor?)||Transferrin||LDL (Carrier protein part)||EGF|
|Ligand/Carrier protein separate from X?||Yes||Yes||No|
|Do ligand & receptor separate inside cell?||No||Yes||No|
|Where do ligand & receptor separate?||Outside the cell||In endosomes||Not separated -- both degraded|
A. Types of Labeling (using added tracers)
B. Detection -- How do you find where the radioactivity (or whatever tracer/label you used) is?
1. Continuous Labeling -- switch from regular, ordinary material to labeled material (material containing radioactivity, fluorescence, etc.) and follow what gets labeled first (with radioactivity, fluorescence, etc.), what gets labeled next, and so on. We will discuss radioactive labeling, but the principle is the same whether label is radioactivity, fluorescence, etc.
2. Pulse-Chase Experiments -- supply radioactive material for a brief time (pulse) and then switch back to ordinary, non-radioactive material (chase). Follow where the radioactivity goes. The "pulse" passes through the cell like a mouse through a boa constrictor. Just as different parts of the boa constrictor bulge out temporarily as the mouse passes down the snake, so different parts of the cell become radioactive temporarily, one at a time, as the radioactive material passes through. Then as the "pulse" or the "mouse" passes on, each part will return to normal -- non radioactive or normal size, depending on whether we are referring to the cell or to the snake.
1. Autoradiography -- Cover a layer of labeled cells with photographic emulsion and count radioactive grains over each organelle or part of the cell. See Becker, Appendix, A-17 (A-18) or Guide to Microscopy. For a picture of typical results, click here or see fig. 12-10 of Becker (7th ed). This is similar to doing in situ assays, in that you examine intact cells to pin down the location of what you are looking for.
Note: Becker's Appendix (or Guide to Microscopy in 5th ed.) has a lot of useful background info on microscopic methods, including immunofluorescence, freeze fracture, etc.
2. Fractionate First -- Break up labeled samples, fractionate into various organelles, and measure radioactivity in each fraction. This is similar to the "grind and find" procedure, in that you break up the cells, separate them into their parts, and test a solution or suspension of each part for what you are looking for.
C. An example: How do you follow newly made molecules moving through the cell and/or on their way out? How do we know newly made proteins go from RER to Golgi etc.?
In examples of detection above, emphasis was on following molecules going in to the cell. This example is about following newly made molecules on their way out.
1. General idea -- Add labeled precursors (small molecules) and measure incorporation into macromolecules.
a. Add labeled precursors, and take cell samples after increasing time intervals.
b. For each sample, wash out unused ('unincorporated') small molecules -- removes labeled molecules not used for synthesis so not incorporated into macromolecules. Radioactivity remaining in dif. parts of the cell is in macromolecules.
c. Use autoradiography for measurement of radioactivity in each cell part or isolated fraction.
2. A specific example-- following secreted proteins out. See handout 6A.
a. Continuous label vs pulse-chase results (See handout 6A & fig. 12-10 of Becker. 6th ed. has curves; 7th ed. has autoradiographs.)
b. Implications: newly made proteins to be secreted go → RER → Golgi → secretory vesicles → outside (See Becker fig. 12-8.) Click here for animation.
To review labeling and RME, try problems 2-8 & 2-11; by now you should be able to do all the problems in problem set 2 & 2R. For another example of the use of labeling, try 3-4D.
D. Another Type of Labeling -- Cell makes its own labeled (fluorescent) protein containing GFP
GFP has been mentioned before. Here are the details.
GFP = green fluorescent protein = small fluorescent protein made by jelly fish. (Click here for page with pictures of GFP and related fluorescent proteins.) Used as tag to follow proteins inside the cell. GFP is not added from outside. Instead, genetic engineering is used to splice the gene for GFP to gene for protein of interest. The recombinant gene makes a fusion protein = normal sequence of amino acid + sequence of amino acids in GFP. Fusion protein (including GFP) is made internally by the cell; in other words, cell makes its own fluorescently tagged version of the protein. Protein usually works normally, but location of protein can be easily followed in cell, because protein has GFP attached. GFP labeled protein is used for many purposes, including following newly made protein through the cell.
For examples of use of GFP, see Becker fig. A-14, or Purves p. 885 (7th ed). Not in 8th ed. (Sadava).
GFP is often used to identify cells that express (turn on) a particular gene. For an example see this picture. The cells that "light up" are the only ones that express (turn on) the fusion gene. Only these cells produce a fusion protein containing GFP. (This example also illustrates why people use small, transparent organisms as "model organisms.") For a really startling picture, try this article.
See also: http://nobelprize.org/nobel_prizes/chemistry/laureates/2008/presentation-speech.html.
See problem 2R-4 for an example of the use of GFP labeling.
Next time: How do newly made proteins get sent to the correct destination? Overview, and then details.