| Zhang and Chasin: July 6, 2007 | previously published | |||||||||||||
| Length | PESE/exon (50-250) | PESE/nt | PESS/exon (50-250) | PESS/nt | pese/ 127 nt | pess/ 127 nt | ave. pese/ ave. pess | pese/ 127 nt | pess/ 127 nt | ave. pese/ ave. pess | ||||
| Constitutive | Ave | 126.7 | 8.9 | 0.070 | 1.7 | 0.014 | 8.9 | 1.8 | 5.1 | 9.5 | 1.7 | 5.5 | ||
| 50-250 nt | SD | 45.6 | 6.5 | 0.046 | 2.4 | 0.019 | ||||||||
| n=114,450 | Median | 121 | 8 | 0.063 | 1 | 0.008 | ||||||||
| Skipped | Ave | 119.0 | 7.4 | 0.062 | 1.6 | 0.014 | 7.9 | 1.8 | 4.4 | 7.3 | 2.0 | 3.6 | ||
| 50-250 nt | SD | 45.1 | 5.7 | 0.043 | 2.3 | 0.020 | ||||||||
| n=11,470 | Median | 112 | 6 | 0.055 | 1 | 0.007 | ||||||||
| Pseudo exons | Ave | 142.2 | 5.3 | 0.037 | 6.7 | 0.047 | 4.7 | 6.0 | 0.8 | 4.0 | 6.3 | 0.6 | ||
| 50-250 nt | SD | 53.9 | 4.6 | 0.030 | 6.4 | 0.043 | ||||||||
| n=92589 | Median | 140 | 4 | 0.031 | 5 | 0.037 | ||||||||
| PESE/PESS sets = corrected compared to those used in original publication See Web site and links: http://cubweb.biology.columbia.edu/pesx/ | ||||||||||||||
| All datasets are repeat-free (RepeatMasker masked). | ||||||||||||||
| Pseudo exons have consensus value scores (Zhang et al., Methods, 2005. Methods 37: 292-305) of >= 75 and 78 for 3' and 5' splice sites, respectively. | ||||||||||||||
| Constitutive exons include ESTs that must bounded by flanking exons in mRNA sequence). Even those occuring only once have been included. | ||||||||||||||