Introduction
Biological sequence analysis
(bioinformatics) is the study of the relationships between
biological sequences and the implication of these
relationships for macromolecular structure, function, and
evolution. Bioinformatics is now a necessary part of the
tools and training of all scientists who use molecular
biological methods because they must process raw DNA
sequences and assign structure and function to gene
products. Bioinformatical methods are based on aspects of a
variety of disciplines including computer science,
probability, and molecular, structural, and evolutionary
biology. The biomedical researcher must understand the
computational and scientific basis of the programs he uses
in order to use the programs correctly.
The purpose of this course is to train biomedical
researchers, including those who may not yet be comfortable
with computers, in bioinformatical methods. All of these
methods center around the identification and classification
of gene products and the elucidation of genome structure.
The biological and computational basis of all methods
studied are covered, the methods are illustrated in class,
and the students run the programs themselves. The course
covers both Unix-based, and web-based programs.
The first three weeks of the course are an introduction to the Unix operating
system and related computer skills. GCG and other Unix-based programs
will run on the Cancer Center DEC-ALPHA (cuccfa). Cuccfa and websites
will be accessed using Windows software, but almost all of what is learned
is applicable to Macintosh machines as well.
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Lecture Instructor:
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Richard Friedman
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Lab instructor:
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Richard Friedman , Farul Ghazali
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Section 1:
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W 9-12 Health Science Library
(1 hour lecture/ 2hours lab)
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Section 2:
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F 9-12 Health Science Library
(1 hour lecture/ 2hours lab)
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Microcomputer lab, 2nd floor, Hammer
Health Sciences Library, Health Sciences
Campus
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