#!/usr/bin/env python #2022-03-03: copy from wyget_era5_mn2t_subregion.py if __name__ == '__main__': import sys from misc.timer import Timer wyt = Timer('start ' + ' '.join(sys.argv)) import xarray as xr import os, os.path, sys, time import salem import pandas as pd import numpy as np import geoxarray from misc.shell import run_shell cntry_name = 'Brazil' cntry_sname = cntry_name.replace(' ', '') data_name = 'mn2t' dname_long = '2m_temperature_min' xname = 'longitude' yname = 'latitude' shapefile = 'shapefile/gadm40_BRA_1.shp' shdf = salem.read_shapefile(shapefile) #name_cols = ['ADM1_EN', 'ADM1_PCODE'] name_col = 'NAME_1' t = pd.date_range('1999-01', '2020-12', freq='MS') years, months = t.year.values, t.month.values print(data_name) ofiles = [] for year,month in zip(t.year, t.month): print(f'{year:04d}-{month:02d}') ifile = f'/tigress/wenchang/data/era5/analysis/{dname_long}/daily/era5.{dname_long}.daily.{year:04d}-{month:02d}.nc' ofile = f'tmp/era5.{data_name}.daily.{cntry_sname}.subregion.{year:04d}-{month:02d}.nc' ofiles.append(ofile) if os.path.exists(ofile): print('[exists]:', ofile) continue print(ifile, 'loading...') ds = salem.open_xr_dataset(ifile).load() if ds.longitude.max() > 180: # transform lon [0,360) -> [-180,180) ds = ds.roll(longitude=ds.longitude.size//2, roll_coords=True) lon_new = ds.longitude.where(ds.longitude<180, other=ds.longitude-360).values ds = ds.assign_coords(longitude=lon_new) das = [] #region_IDs = [] region_names = [] N = len(shdf) for i in range(N): shape_sub = shdf.iloc[i:i+1, :] r = shdf.iloc[i, :] #lon_slice = slice(r.min_x, r.max_x) #lat_slice = slice(r.min_y, r.max_y) #g = r.geometry region_name = '_'.join( r[name_col].split() ) #name_col = 'NAME_1' try: #da = ds[data_name].salem.roi(geometry=g).geo.fldmean() da = ds[data_name].salem.subset(shape=shape_sub, margin=1) \ .salem.roi(shape=shape_sub)\ .geo.fldmean() print('[OK]:', i+1,'of', N, region_name) except ValueError: #sub shape area is too small to be selected; use value interpolated on centroid instead centroid0 = shape_sub.centroid.iloc[0] lon0 = centroid0.x lat0 = centroid0.y da = ds[data_name].interp(latitude=lat0, longitude=lon0).drop(['longitude', 'latitude']) #print('\t[Failed]', i+1,'of', N, region_name) print('\t[single point used]', i+1,'of', N, region_name) das.append(da) region_names.append(region_name) i_record = range(len(das)) da = xr.concat(das, pd.Index(region_names, name='region_name')).transpose() da.attrs = ds[data_name].attrs ds_new = da.to_dataset(name=data_name) ds_new.attrs = ds.attrs ds_new.attrs['region_name'] = '; '.join(region_names) ds_new.to_netcdf(ofile, unlimited_dims='time', encoding={data_name: {'_FillValue': None}}) print('[saved]:', ofile) #ncrcat ofile = ofiles[0].replace('tmp/', '').replace(f'{years[0]}-{months[0]:02d}', f'{years[0]}-{years[-1]}') cmd = f'ncrcat {" ".join(ofiles)} {ofile}' run_shell(cmd) if __name__ == '__main__': wyt.check('**done**')