Lesson 5: Profile Analysis
PSIBLAST and DELTABLAST
Prosite Profiles
Meme and a Motifsearch-like program called Mast
Blocks database
SMART database
Interpro: Combined protein sequence and motif site
CD-Search: Searches libraries of profiles
DART: Gives block domain diagrams of protein and its homologs
SUPERFAMILY: Classifies Proteins According to Superfamily
Clustal to Stockholm conversion
Hmmscan: Searches sequence against Hidden Markov Model protein family database
Phmmer: Searches sequence against sequence database by means of hidden Markov models
Hmmsearch: Searches multiple sequence alignment against sequence database by means of hidden Markov models
Jackhmmer: Iterative hidden Markov model search
SH2 Meme result
SH2 Domains aligned by T-Coffee in Clustal format
Sequence Analysis Web Sites Home Page