Publications
Google scholar Pubmed Peer review records (publons)- Plata, G., Baxter, NT. Susanti, D., Volland-Munson, A. Gangaiah, D., Nagireddy, A., Mane, SP., Balakuntla, J., Hawkins, TD., Kumar, A. 2022. Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome.. Communications Biology 5, 293; doi:10.1038/s42003-022-03239-6 [pdf]
- Usmanova D.R., Plata, G., Vitkup, D. 2021. The relationship between the misfolding avoidance hypothesis and protein evolutionary rates in the light of empirical evidence.. Genome Biology and Evolution 13(2); doi:10.1093/gbe/evab006 [pdf]
- Zhao, X., Plata, G., Dixit, P. 2021. SiGMoiD: A super-statistical generative model for binary data. PLOS Computational Biology 17(8): e1009275; doi:https://doi.org/10.1371/journal.pcbi.1009275 [pdf]
- Konate, M., Plata, G., Park,J., Wang, H.H., Vitkup, D. 2019. Molecular function limits divergent protein evolution on planetary timescales. Elife 8:e39705; doi: https://doi.org/10.7554/eLife.39705 [pdf]
- Plata, G., Vitkup, D. 2017. Protein Stability and avoidance of toxic misfolding do not explain the sequence constraints of highly expressed proteins. Mol. Biol. Evol. 35(3):700-703 [pdf]
- Ndunguru, J., De Leon L., Doyle, C., Sseruwagi, P., Plata, G., Legg, J., Thompson, G., Tohme, J., Aveling, T., Ascencio, J., Hanley-Bowdoin, L. 2016. Two Novel DNAs that Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease. J. Virol. 90: 4160-4173 [pdf]
- Plata, G., Henry, C., Vitkup, D. 2015. Long-term phenotypic evolution of bacteria. Nature. 517(7534):369-72 [pdf]
- Marezda, AT., Allie, F., Plata, G., Rey, MEC. 2015. Sequences enhancing cassava mosaic disease symptoms occur in the cassava genome and are associated with South African cassava mosaic virus infection. Mol. Genet. Genomics. 291(3):1467-1485 [pdf]
- Plata, G., Vitkup, D. 2013. Genetic robustness and functional divergence of gene duplicates. Nucleic Acids Res.. 42(4):2405-2414 [pdf]
- Ballén-Taborda, C., Plata, G., Ayling, S., Rodríguez-Zapata, F., Becerra, L., Duitama, J., Tohme, J. 2013. Identification of cassava microRNAs under abiotic stress. Int. J. Genomics. 2013: 857986 [pdf]
- Anton, BP., et al. 2013. The COMBREX project: design, methodology, and initial results. PLoS Biol. 11(8):e1001638. [pdf]
- Plata, G., Fuhrer, T., Hsiao, T., Sauer, U., Vitkup, D. 2012. Global probabilistic annotation of metabolic networks enables enzyme discovery. Nat. Chem. Biol. 8:848-854 [pdf]
- Plata, G., Hsiao, T., Olszewski, K., Llinás, M., Vitkup, D. 2010. Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. Mol. Syst. Biol. 6:408 [pdf]
- Plata, G., Gottesman, M., Vitkup, D. 2010. The rate of the molecular clock and the cost of gratuitous protein synthesis. Genome Biol. 11:R98 [pdf]
- Sakurai, T., Plata, G., Rodriguez, F., Seki, M., Salcedo, A., Toyoda, A., Ishiwata, A., Tohme, J., Sakaki, Y., Shinozaki, K., Ishitani, M. 2007. Sequencing analysis of 20.000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol. 7:66 [pdf]
2018 Germán Plata
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